Semester.ly

Johns Hopkins University | EN.550.450

Computational Molecular Medicine

4.0

credits

Average Course Rating

(4.52)

Computational systems biology has emerged as the dominant framework for analyzing high-dimensional “omics” data in order to uncover the relationships among molecules, networks and disease. In particular, many of the core methodologies are based on statistical modeling, including machine learning, stochastic processes and statistical inference. We will cover the key aspects of this methodology, including measuring associations, testing multiple hypotheses, and learning predictors, Markov chains and graphical models. In addition, by studying recent important articles in cancer systems biology, we will illustrate how this approach enhances our ability to annotate genomes, discover molecular disease networks, detect disease, predict clinical outcomes, and characterize disease progression. Whereas a good foundation in probability and statistics is necessary, no prior exposure to molecular biology is required (although helpful).

Fall 2012

(4.12)

Spring 2015

(4.91)

Fall 2012

Professor: Donald Geman

(4.12)

The course covers methods in a cutting-edge field with many applications. Students liked how the professor used current literature to demonstrate concepts. Some said that the professor was not very accessible. Many felt overwhelmed and said the course should have had more prerequisites. A strong statistics background is necessary and a biology background is also helpful. There are no exams and

Spring 2015

Professor: Donald Geman

(4.91)

The best aspects of the course included the knowledgeable professor who easily explained difficult concepts and gave assignments with real world application. Some students felt that the TA’s were not helpful and that the material became increasingly difficult. Students appreciated the exposure to cutting-edge applications of the concepts covered in class. Suggestions for improvement included grading the code portions of assignments, increasing opportunities for overall feedback, and having clearer grading rubrics. Prospective students should have a good background in statistics and probability and strong programming skills. Students interested in biostatistics and bioinformatics should